Basic Information
Locus ID:
gene_10467
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 42682004 | 42687705 | - | gene_10467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 102,061.39 Da | 51.01 | 52.10 | -1.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 411 | 438 | 3.3E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 377 | 405 | 1.7E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 370 | 406 | 4.32E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 369 | 407 | 6.4E-15 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 408 | 439 | 3.6E-8 | - |
| SMART | SM00547 | zf_4 | 379 | 403 | 9.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 412 | 436 | 2.9E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 410 | 439 | 9.472667 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 377 | 406 | 10.10503 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 381 | 400 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 414 | 433 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 843 | 864 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 669 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 371 | - | - |
| Coils | Coil | Coil | 70 | 90 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R1A6 | RanBP2-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology