Basic Information
Locus ID:
gene_10424
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 102700660 | 102708129 | + | gene_10424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 54,580.69 Da | 41.00 | 76.97 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 339 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 337 | 2.0E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 24 | 392 | 7.67E-125 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 16 | 405 | 5.8E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 10 | 464 | 1.8E-207 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 157 | 180 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 135 | 155 | 9.8E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 235 | 248 | 9.8E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 114 | 131 | 9.8E-62 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 189 | 204 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 176 | 192 | 9.8E-62 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 274 | 284 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 252 | 270 | 9.8E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 9.8E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 78 | 96 | 9.8E-62 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 441 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021591917.1 | histone deacetylase 6 [Manihot esculenta] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UJI0 | Histone deacetylase OS=Manihot esculenta OX=3983 GN=MANES_14G061800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology