Basic Information
Locus ID:
gene_10392
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
60s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 41696407 | 41699492 | - | gene_10392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.93 | 21,037.39 Da | 40.32 | 86.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 187 | 4.7E-94 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 20 | 139 | 7.06E-27 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 187 | 5.0E-100 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 187 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 0 |
| RefSeq | XP_010674074.1 | 60S ribosomal protein L18-2 [Beta vulgaris subsp. vulgaris] | 0 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C8Z7W8 | Ribosomal_L18e/L15P domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology