Basic Information
Locus ID:
gene_10386
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 41568234 | 41578499 | - | gene_10386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 122,031.33 Da | 40.84 | 84.29 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 481 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 884 | 918 | 0.068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 654 | 2.9E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 806 | 1068 | 1.69E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 561 | 7.9E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 704 | 938 | 2.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 671 | 6.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 939 | 1080 | 8.6E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 527 | 570 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 797 | 833 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 613 | 1.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.1E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 879 | 918 | 8.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 434 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 968 | 1010 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 524 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1033 | 1065 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 876 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 0.0013 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 886 | 921 | 9.493783 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.453461 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 886 | 927 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 490 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 591 | 622 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 468 | 482 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1074 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1104 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology