Basic Information
Locus ID:
gene_10261
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
SPT16
Description:
FACT complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 39477025 | 39492907 | - | gene_10261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 121,817.57 Da | 47.31 | 78.86 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01091 | CDC68-like | 194 | 436 | 1.91058E-102 | IPR033825 |
| Pfam | PF08512 | Histone chaperone Rttp106-like | 833 | 917 | 5.6E-17 | IPR013719 |
| Pfam | PF08644 | FACT complex subunit (SPT16/CDC68) | 550 | 704 | 4.8E-53 | IPR013953 |
| Pfam | PF14826 | FACT complex subunit SPT16 N-terminal lobe domain | 20 | 180 | 6.3E-45 | IPR029148 |
| Pfam | PF00557 | Metallopeptidase family M24 | 197 | 427 | 7.2E-30 | IPR000994 |
| SUPERFAMILY | SSF55920 | Creatinase/aminopeptidase | 255 | 454 | 2.09E-31 | IPR036005 |
| Gene3D | G3DSA:2.30.29.210 | FACT complex subunit Spt16p/Cdc68p | 526 | 651 | 3.8E-37 | - |
| Gene3D | G3DSA:3.40.350.10 | - | 19 | 186 | 1.3E-52 | IPR029149 |
| Gene3D | G3DSA:3.90.230.10 | Creatinase/methionine aminopeptidase superfamily | 187 | 448 | 9.0E-67 | IPR036005 |
| Gene3D | G3DSA:2.30.29.150 | - | 652 | 812 | 3.1E-63 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 822 | 953 | 2.5E-56 | IPR011993 |
| SMART | SM01285 | FACT_Spt16_Nlob_2 | 20 | 182 | 5.8E-65 | IPR029148 |
| SMART | SM01286 | SPT16_2 | 550 | 704 | 4.5E-86 | IPR013953 |
| SMART | SM01287 | Rtt106_2 | 829 | 919 | 2.8E-35 | IPR013719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1039 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 1083 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1047 | 1069 | - | - |
| Coils | Coil | Coil | 985 | 1008 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10710.1 | global transcription factor C. encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC. | 0 |
| RefSeq | XP_010674525.1 | FACT complex subunit SPT16 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7X923 | FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPT16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KN45 | FACT complex subunit OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26490, jg28277, jg30002, jg30003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10261 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17590, Sbi_jg62262 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg839 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007391 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl14225, Sgl14407, Sgl19371, Sgl19576, Sgl19577, Sgl45926 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009507, gene:ENSEOMG00000029745 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0000310, CQ.Regalona.r1.4AG0004890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095750 |
| Apiaceae | Apium graveolens | 4 | Ag1G00560, Ag2G00322, Ag6G02010, Ag6G02871 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002440, COCNU_12G001840 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103713979, gene-LOC103717831 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2247.V1.1, AsparagusV1_07.2829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G21229 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10670.1, AT4G10710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028377m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06780.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g041080.2N, BniB05g058310.2N, BniB08g051870.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G0475, Ceq06G0476 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G0486, Cgl06G0487 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0167s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8272 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1651, evm.TU.LG03.1652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038171 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06698, Lb1G06711 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3378, AH09.531, BH01.4725, BH09.679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0322830, gene-QOZ80_4BG0356180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0104510.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_021674, gene-QYE76_021696, gene-QYE76_030380 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G002930, Oco08G003260, Oco23G005990 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g25550.1, LOC_Os08g31240.1, LOC_Os12g26030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G130800, gene-BS78_10G036900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107714 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015870, Chr26G004020 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G054000, Tel2E01G054900, Tel2E01G055400 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG007560, gene_TRIDC2BG002050 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G017400.1, TraesCS2A02G069500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229990_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-49057, nbis-gene-49081, nbis-gene-49759 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19462, Zma_g21080 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1261, evm.TU.LG08.1263, evm.TU.LG22.166 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.26, evm.TU.Scaffold_1_RagTag.27 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2860, nbisL1-mrna-2936, nbisL1-mrna-8255 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3800, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13634, nbisL1-mrna-5124 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.12, evm.TU.utg000009l.12 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006202, Maker00011133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13027, nbisL1-mrna-19927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16095, nbisL1-mrna-24 |
| Salicaceae | Populus euphratica | 5 | populus_peu13175, populus_peu13176, populus_peu13177 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598495, gene-LOC132598497 |
| Solanaceae | Solanum chilense | 3 | SOLCI003275300, SOLCI003275400, SOLCI007501600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002544, gene-LOC107004067, gene-LOC107008231 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32274_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1430 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04850.v3.1 |