Basic Information
Locus ID:
gene_10256
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 39403662 | 39405983 | - | gene_10256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 47,209.24 Da | 44.26 | 76.34 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 70 | 391 | 3.0E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 39 | 432 | 3.74E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 30 | 429 | 7.2E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 255 | 275 | 7900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 232 | 253 | 5.9 | IPR006626 |
| SMART | SM00710 | pbh1 | 205 | 231 | 600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 285 | 306 | 2.1 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 262 | 275 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021734520.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology