halophFGD

Basic Information

Locus ID: gene_10152

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_8_Chr_3	37805130	37808821	-	gene_10152

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.82	36,088.50 Da	27.99	81.46	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	24	324	6.819E-95	-
Pfam	PF00400	WD domain, G-beta repeat	286	324	6.6E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	72	109	2.4E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	24	59	2.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	155	193	6.2E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	115	151	6.6E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	240	280	4.5E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	198	236	1.0E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	20	324	5.29E-95	IPR036322
Gene3D	G3DSA:2.130.10.10	-	14	328	5.9E-130	IPR015943
SMART	SM00320	WD40_4	154	193	9.1E-12	IPR001680
SMART	SM00320	WD40_4	112	151	6.0E-11	IPR001680
SMART	SM00320	WD40_4	196	236	6.9E-6	IPR001680
SMART	SM00320	WD40_4	70	109	6.0E-11	IPR001680
SMART	SM00320	WD40_4	284	325	4.9E-5	IPR001680
SMART	SM00320	WD40_4	21	60	6.0E-8	IPR001680
SMART	SM00320	WD40_4	239	281	1.7E-5	IPR001680
PIRSF	PIRSF002394	GNBP_B	15	327	1.2E-79	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	161	197	11.998316	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	77	118	17.693363	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	77	113	13.527399	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	28	63	9.731054	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	119	160	18.495401	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	204	241	10.442869	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	246	290	10.040596	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	28	69	12.346452	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	161	202	15.755108	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	119	156	14.212849	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	204	245	13.883689	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	138	152	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	96	110	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	180	194	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	268	282	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	138	152	3.7E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	96	110	3.7E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	268	282	3.7E-9	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_010105105.1	COMPASS-like H3K4 histone methylase component WDR5A [Morus notabilis]
Swiss-Prot	Q9M2Z2	COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1
TrEMBL	A0A7N0T5K4	COMPASS-like H3K4 histone methylase component WDR5A OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1