Basic Information
Locus ID:
gene_10151
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LETM1 and EF-hand domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 37791676 | 37808821 | - | gene_10151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 110,315.70 Da | 49.97 | 83.10 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01433 | Ribosomal_L16_L10e | 81 | 187 | 4.12444E-40 | IPR016180 |
| CDD | cd00051 | EFh | 910 | 970 | 4.28388E-6 | IPR002048 |
| Pfam | PF07766 | LETM1-like protein | 439 | 705 | 1.7E-107 | IPR011685 |
| Pfam | PF00252 | Ribosomal protein L16p/L10e | 79 | 187 | 4.1E-34 | IPR016180 |
| SUPERFAMILY | SSF54686 | Ribosomal protein L16p/L10e | 80 | 190 | 1.44E-34 | IPR036920 |
| SUPERFAMILY | SSF47473 | EF-hand | 538 | 970 | 9.86E-8 | IPR011992 |
| Gene3D | G3DSA:3.90.1170.10 | Ribosomal protein L10e/L16 | 65 | 195 | 3.2E-41 | IPR036920 |
| Gene3D | G3DSA:1.10.238.10 | - | 869 | 971 | 1.5E-7 | - |
| TIGRFAM | TIGR01164 | rplP_bact: ribosomal protein uL16 | 68 | 183 | 1.0E-38 | IPR000114 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 906 | 941 | 10.3012 | IPR002048 |
| ProSiteProfiles | PS51758 | Letm1 ribosome-binding (RBD) domain profile. | 537 | 744 | 23.956902 | IPR033122 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 919 | 931 | - | IPR018247 |
| ProSitePatterns | PS00701 | Ribosomal protein L16 signature 2. | 138 | 149 | - | IPR020798 |
| PRINTS | PR00060 | Ribosomal protein L16 signature | 81 | 93 | 1.8E-25 | IPR000114 |
| PRINTS | PR00060 | Ribosomal protein L16 signature | 114 | 143 | 1.8E-25 | IPR000114 |
| PRINTS | PR00060 | Ribosomal protein L16 signature | 144 | 173 | 1.8E-25 | IPR000114 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 380 | - | - |
| Coils | Coil | Coil | 746 | 788 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65540.1 | LETM1-like protein. | 0 |
| RefSeq | XP_010673858.1 | mitochondrial proton/calcium exchanger protein [Beta vulgaris subsp. vulgaris] | 0 |
| Q5ZK33 | Mitochondrial proton/calcium exchanger protein OS=Gallus gallus OX=9031 GN=LETM1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZR65 | Mitochondrial proton/calcium exchanger protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14642, jg2701, jg5981 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10151, gene_15760 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005145, Ah019667 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g059020, BVRB_4g074600 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17400, Sbi_jg38466, Sbi_jg62048, Sbi_jg6573 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15352, Seu_jg662 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006449 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01882, Sgl07059, Sgl07060, Sgl24274, Sgl29449 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009339, gene:ENSEOMG00000014569 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2BG0009420, CQ.Regalona.r1.3AG0011300 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247880 |
| Apiaceae | Apium graveolens | 1 | Ag1G01051 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012360, contig69646984G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706058, gene-LOC103708593, gene-LOC120112160 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.498.V1.1, AsparagusV1_09.515.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G30921, Ftri12G09869, Ftri6G23355 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G65540.1, AT3G59820.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005802m.g.v1.0, Thhalv10018184m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g03320.v2.2, Sp5g20450.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g043150.2N, BniB06g062920.2N, BniB08g074100.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G2272, Ceq07G0292 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G2384, Cgl07G0274 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g04910 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0619s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g05840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4302 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG11.497, evm.TU.LG12.252 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025091, Pov_00038865 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G02848, Lb3G17325, Lb3G19917 |
| Poaceae | Echinochloa crus-galli | 9 | AH05.2218, AH07.2539, AH09.1436, BH05.2295, BH07.2348 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0136920, gene-QOZ80_2BG0192560 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0064010.1, HORVU.MOREX.r3.2HG0178460.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013367, gene-QYE76_013436, gene-QYE76_044803 |
| Poaceae | Oryza coarctata | 4 | Oco03G014920, Oco04G015410, Oco07G009650, Oco08G009450 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g39550.1, LOC_Os04g41950.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G191100, gene-BS78_06G147700 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0204545, Pt_Chr0302245, Pt_Chr0302283, Pt_Chr0505156 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G012040, Chr13G007940, Chr23G009700, Chr25G013420 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G410700, Tel2E01G612000, Tel3E01G636000 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG037320, gene_TRIDC1BG042300 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS1A02G248400.1, TraesCS1B02G259000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078520_P001, Zm00001eb246700_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14094, nbis-gene-18583, nbis-gene-5161 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g16639, Zma_g21542, Zma_g27090 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.818, evm.TU.LG05.2116, evm.TU.LG08.1380 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g25210 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1518, evm.TU.Scaffold_4_RagTag.6 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12809, nbisL1-mrna-15491 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13241, nbisL1-mrna-20491 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1004, nbisL1-mrna-22520 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000010l.462, evm.TU.utg000011l.746 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000356, Maker00007772, Maker00008821 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-1175, nbisL1-mrna-13556, nbisL1-mrna-17618 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-20461, nbisL1-mrna-24248, nbisL1-mrna-4087 |
| Salicaceae | Populus euphratica | 3 | populus_peu06642, populus_peu20532, populus_peu22478 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604322, gene-LOC132613474 |
| Solanaceae | Solanum chilense | 2 | SOLCI001767200, SOLCI007296000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004853, gene-LOC107005877 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_4735, gene_9775 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1594, TC02G2984 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36760.v3.1, Zosma06g28050.v3.1 |