Basic Information
Locus ID:
gene_10143
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 37627093 | 37640857 | - | gene_10143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 66,652.59 Da | 54.75 | 56.98 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 136 | 186 | 5.46889E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 205 | 267 | 2.4E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 284 | 332 | 1.8E-9 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 558 | 586 | 5.73E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 274 | 1.5E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 334 | 4.35E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 133 | 217 | 6.36E-19 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 557 | 586 | 4.7E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 263 | 518 | 1.9E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 217 | 3.0E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 205 | 267 | 6.1E-24 | IPR002867 |
| SMART | SM00547 | zf_4 | 561 | 585 | 7.4E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 271 | 341 | 0.036 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 555 | 586 | 8.354739 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 345 | 52.178772 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 180 | 9.258371 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 563 | 582 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021734336.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Chenopodium quinoa] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMM1 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology