Basic Information
Locus ID:
gene_10001
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 35097259 | 35104800 | - | gene_10001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 30,485.53 Da | 36.14 | 83.08 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 38 | 135 | 6.7E-8 | IPR006527 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 15 | 135 | 6.7E-14 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 266 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010673686.1 | F-box protein At3g07870 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9EK46 | FBA_1 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10001 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17883, Sbi_jg62512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1088 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007155 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl59201 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001810, CQ.Regalona.r1.4BG0001880 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005517 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.674 |
| Solanaceae | Solanum chilense | 1 | SOLCI005962200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030802 |