Basic Information
Locus ID:
gene.Thate11g00170
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 654806 | 659392 | - | gene.Thate11g00170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 56,171.43 Da | 57.22 | 64.20 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 117 | 169 | 1.4114E-23 | - |
| Pfam | PF12315 | Protein DA1 | 266 | 491 | 6.5E-94 | IPR022087 |
| Pfam | PF00412 | LIM domain | 117 | 171 | 2.4E-7 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 110 | 142 | 4.58E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 197 | 9.45E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 112 | 176 | 2.3E-11 | - |
| SMART | SM00132 | lim_4 | 116 | 168 | 1.6E-5 | IPR001781 |
| SMART | SM00726 | uim | 83 | 102 | 20.0 | IPR003903 |
| SMART | SM00726 | uim | 55 | 74 | 2.3 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 115 | 175 | 10.7515 | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 430 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_020086974.1 | protein DA1-related 2 isoform X1 [Ananas comosus] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5ETV8 | protein DA1-related 2 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109709251 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology