Basic Information
Locus ID:
gene.Thate11g00060
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_11 | 180071 | 183416 | + | gene.Thate11g00060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 24,340.91 Da | 52.14 | 61.88 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 107 | 157 | 6.2E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 160 | 1.32E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 169 | 4.3E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 106 | 158 | 4.7E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 99 | 164 | 18.82605 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010905985.1 | uncharacterized protein LOC105033039 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QBB8 | uncharacterized protein LOC105033039 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology