Basic Information
Locus ID:
gene.Thate09g19510
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 189902712 | 190115357 | - | gene.Thate09g19510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 78,653.83 Da | 57.54 | 82.49 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 224 | 357 | 4.41779E-60 | - |
| CDD | cd17920 | DEXHc_RecQ | 22 | 223 | 1.1129E-105 | - |
| Pfam | PF16124 | RecQ zinc-binding | 360 | 433 | 6.9E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 244 | 346 | 3.2E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 38 | 202 | 5.2E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 73 | 368 | 1.8E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 223 | 9.6E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 224 | 449 | 1.3E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 267 | 348 | 1.2E-23 | IPR001650 |
| SMART | SM00487 | ultradead3 | 30 | 232 | 8.5E-33 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 24 | 437 | 2.3E-139 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 42 | 216 | 24.064718 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 240 | 385 | 18.132389 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_031287376.1 | ATP-dependent DNA helicase Q-like 3 [Pistacia vera] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QZ19 | ATP-dependent DNA helicase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology