Basic Information
Locus ID:
gene.Thate09g15910
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
phosphoribosylaminoimidazole carboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 109261424 | 109316699 | + | gene.Thate09g15910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 62,323.07 Da | 40.30 | 95.83 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02222 | ATP-grasp domain | 132 | 303 | 2.9E-57 | IPR003135 |
| Pfam | PF17769 | Phosphoribosylaminoimidazole carboxylase C-terminal domain | 330 | 390 | 5.4E-18 | IPR040686 |
| Pfam | PF00731 | AIR carboxylase | 413 | 558 | 1.7E-67 | IPR000031 |
| SUPERFAMILY | SSF51246 | Rudiment single hybrid motif | 328 | 400 | 4.08E-15 | IPR011054 |
| SUPERFAMILY | SSF56059 | Glutathione synthetase ATP-binding domain-like | 123 | 323 | 3.71E-59 | - |
| SUPERFAMILY | SSF52255 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 411 | 576 | 1.28E-68 | - |
| SUPERFAMILY | SSF52440 | PreATP-grasp domain | 25 | 120 | 4.03E-26 | IPR016185 |
| Gene3D | G3DSA:3.30.1490.20 | - | 133 | 197 | 6.5E-25 | IPR013815 |
| Gene3D | G3DSA:3.40.50.20 | - | 25 | 131 | 3.8E-41 | - |
| Gene3D | G3DSA:3.40.50.1970 | - | 400 | 578 | 4.0E-80 | - |
| Gene3D | G3DSA:3.30.470.20 | - | 198 | 399 | 2.0E-77 | - |
| SMART | SM01001 | AIRC_2 | 411 | 560 | 9.5E-100 | IPR000031 |
| TIGRFAM | TIGR01162 | purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit | 413 | 567 | 3.3E-69 | IPR000031 |
| TIGRFAM | TIGR01161 | purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit | 27 | 390 | 8.8E-125 | IPR005875 |
| PIRSF | PIRSF001340 | AIRC | 21 | 578 | 4.8E-275 | IPR016301 |
| ProSiteProfiles | PS50975 | ATP-grasp fold profile. | 128 | 316 | 45.250103 | IPR011761 |
| Hamap | MF_01928 | N5-carboxyaminoimidazole ribonucleotide synthase [purK]. | 26 | 387 | 39.837399 | IPR005875 |
| Hamap | MF_01929 | N5-carboxyaminoimidazole ribonucleotide mutase [purE]. | 413 | 564 | 33.846703 | IPR033747 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37690.1 | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative. | 0 |
| RefSeq | XP_010915413.1 | phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [Elaeis guineensis] | 0 |
| P55195 | Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia OX=3918 GN=PURKE PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QZ55 | phosphoribosylaminoimidazole carboxylase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105040545 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11393, jg22689 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12417 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015441 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g196130, BVRB_8g196140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25364, Sbi_jg9216 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011144 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41805, Sgl46603 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012069, gene:ENSEOMG00000034638 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014090, CQ.Regalona.r1.8BG0015420 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30091390, pistato.v30183950, pistato.v30184030 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00942 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G014360 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708454 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1712.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17923 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G05140.1, AT2G37690.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016367m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g20070.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g007070.2N, BniB06g006840.2N, BniB08g023960.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0605, Ceq06G1397 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0713, Cgl06G1459 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g13250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0073s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate09g15910, gene.Thate09g15930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7882 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2679, evm.TU.LG03.2228 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040172 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05813, Lb5G28358 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.286, BH02.305, CH02.335 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0003010, gene-QOZ80_1BG0051490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0244140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050918 |
| Poaceae | Oryza coarctata | 2 | Oco01G004360, Oco02G004370 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g10280.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G027800, gene-BS78_K021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205258, Pt_Chr0503778 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G027580, Chr05G005290, Chr05G005310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G240100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG017010, gene_TRIDC3BG022670 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G312300.1, TraesCS3B02G159900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb120570_P001, Zm00001eb284760_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32583 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7295 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2073, evm.TU.LG14.1249 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.294 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7858 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5843 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.201 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011299 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7760 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-269 |
| Salicaceae | Populus euphratica | 2 | populus_peu15950, populus_peu19591 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614254 |
| Solanaceae | Solanum chilense | 1 | SOLCI001502800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004897 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5574 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1983 |
| Zosteraceae | Zostera marina | 2 | Zosma03g05960.v3.1, Zosma06g30060.v3.1 |