Basic Information
Locus ID:
gene.Thate09g12800
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 79309175 | 79327086 | - | gene.Thate09g12800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 48,852.37 Da | 50.38 | 74.99 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 47 | 132 | 1.32925E-50 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 326 | 3.45036E-21 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 49 | 132 | 7.8E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 262 | 329 | 2.3E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 42 | 142 | 6.28E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 249 | 334 | 8.38E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 39 | 143 | 6.6E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 245 | 335 | 7.9E-21 | IPR036910 |
| SMART | SM01014 | ARID_2 | 42 | 132 | 1.7E-28 | - |
| SMART | SM00501 | bright_3 | 46 | 137 | 9.3E-30 | IPR001606 |
| SMART | SM00398 | hmgende2 | 261 | 330 | 7.3E-18 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 262 | 329 | 14.402429 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 45 | 136 | 25.403498 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_008778105.1 | high mobility group B protein 15-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BJ30 | high mobility group B protein 15-like isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103697941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology