Basic Information
Locus ID:
gene.Thate09g11060
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 64918830 | 64966378 | + | gene.Thate09g11060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.47 | 29,281.37 Da | 61.67 | 69.81 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 87 | 220 | 2.35392E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 89 | 219 | 1.7E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 81 | 226 | 2.62E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 72 | 239 | 2.9E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 81 | 225 | 2.8E-48 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 77 | 225 | 42.729324 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 150 | 166 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| Coils | Coil | Coil | 202 | 222 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_004251221.1 | ubiquitin-conjugating enzyme E2-23 kDa [Solanum lycopersicum] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | K4DAP4 | UBC15 OS=Solanum lycopersicum OX=4081 GN=101261295 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology