Basic Information
Locus ID:
gene.Thate09g09880
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 56775166 | 56777970 | + | gene.Thate09g09880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 105,782.61 Da | 58.84 | 71.31 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 732 | 818 | 4.74262E-17 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 203 | 294 | 3.9E-14 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 717 | 825 | 3.16E-6 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 697 | 841 | 1.1E-26 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 624 | - | - |
| Coils | Coil | Coil | 495 | 515 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048490058.1 | uncharacterized protein LOC104891519 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9HQ98 | Retrotrans_gag domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12571, gene_15568 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg55472, Sbi_jg8972 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120107363 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G03390, Ftri12G31698, Ftri2G11694, FtriNA14812 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09880 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00264, Lb3G20497, Lb4G25704 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1315, CH03.1969, CH05.577, CH08.1150 |
| Poaceae | Eleusine coracana subsp. coracana | 35 | gene-QOZ80_1AG0019390, gene-QOZ80_1BG0066180 ... |
| Poaceae | Oryza sativa | 2 | ChrUn.fgenesh.mRNA.3, LOC_Os10g04210.1 |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G262700, gene-BS78_02G095400, gene-BS78_K070500 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G020320, Chr09G007960, Chr10G004130, Chr20G010620 ... |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1312, nbis-gene-27882, nbis-gene-27898 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG03.1598, evm.TU.LG09.83, evm.TU.LG12.179 ... |
| Solanaceae | Lycium barbarum | 13 | gene-LOC132607653, gene-LOC132607841, gene-LOC132607949 ... |