Basic Information
Locus ID:
gene.Thate09g09280
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 50242514 | 50615240 | + | gene.Thate09g09280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 480,726.53 Da | 47.73 | 86.23 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2664 | 2778 | 1.16743E-4 | - |
| Pfam | PF00168 | C2 domain | 2662 | 2771 | 1.4E-4 | IPR000008 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2020 | 2189 | 1.8E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2273 | 2414 | 9.9E-13 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 577 | 804 | 5.7E-33 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.3E-31 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 383 | 1.4E-64 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3294 | 3599 | 9.6E-13 | IPR009543 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3843 | 3947 | 5.9E-8 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2647 | 2770 | 2.36E-5 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2648 | 2786 | 3.7E-6 | IPR035892 |
| SMART | SM00694 | dysfc | 3000 | 3040 | 4.7E-4 | IPR006614 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3666 | 3685 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AMX4 | uncharacterized protein LOC103722332 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103722332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology