Basic Information
Locus ID:
gene.Thate09g04890
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 27758392 | 27760077 | + | gene.Thate09g04890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 61,680.85 Da | 53.73 | 79.23 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 376 | 445 | 2.51728E-41 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 383 | 428 | 3.8E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 57 | 240 | 3.5E-51 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 382 | 446 | 4.32E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 373 | 445 | 9.0E-17 | IPR036638 |
| SMART | SM00353 | finulus | 385 | 434 | 1.3E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 379 | 428 | 16.729465 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 384 | - | - |
| Coils | Coil | Coil | 425 | 445 | - | - |
| Coils | Coil | Coil | 561 | 561 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_042055324.1 | transcription factor MYC2-like [Salvia splendens] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5YKN8 | BHLH domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA04476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology