Basic Information
Locus ID:
gene.Thate09g04650
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 24302913 | 24303428 | - | gene.Thate09g04650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 18,243.16 Da | 44.97 | 90.23 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 98 | 160 | 5.01584E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 96 | 159 | 3.8E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 21 | 82 | 3.6E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 11 | 160 | 2.8E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 3 | 91 | 5.0E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 92 | 167 | 2.0E-22 | - |
| SMART | SM00054 | efh_1 | 21 | 49 | 0.0012 | IPR002048 |
| SMART | SM00054 | efh_1 | 57 | 85 | 0.15 | IPR002048 |
| SMART | SM00054 | efh_1 | 134 | 162 | 4.2E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 98 | 126 | 0.0028 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 17 | 52 | 12.755995 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 53 | 88 | 9.826979 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 130 | 165 | 13.537066 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 94 | 129 | 13.899706 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 30 | 42 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 143 | 155 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 66 | 78 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 107 | 119 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_011070324.1 | probable calcium-binding protein CML11 [Sesamum indicum] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SLJ5 | probable calcium-binding protein CML11 OS=Sesamum indicum OX=4182 GN=LOC105156009 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology