Basic Information
Locus ID:
gene.Thate09g04540
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 23700378 | 23732305 | - | gene.Thate09g04540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 139,620.23 Da | 39.87 | 83.20 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 583 | 618 | 5.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1052 | 1086 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 975 | 1255 | 5.86E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 478 | 794 | 1.79E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1106 | 1250 | 2.9E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 680 | 810 | 8.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 870 | 1097 | 8.2E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 445 | 674 | 3.8E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 665 | 708 | 83.0 | IPR001680 |
| SMART | SM00668 | ctlh | 170 | 228 | 3.2E-14 | IPR006595 |
| SMART | SM00667 | Lish | 140 | 172 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 963 | 1001 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 618 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 571 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 751 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1004 | 1044 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1137 | 1179 | 8.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 621 | 662 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1047 | 1086 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 510 | 3.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 584 | 627 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 140 | 172 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 584 | 623 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1054 | 1088 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1054 | 1088 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 170 | 228 | 13.619324 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 605 | 619 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1240 | 1271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1234 | 1271 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_010243111.1 | PREDICTED: protein TPR2-like [Nelumbo nucifera] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443NRC0 | Protein TPR2-like protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00973000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology