Basic Information
Locus ID:
gene.Thate09g04250
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 22284662 | 22287087 | - | gene.Thate09g04250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 52,161.70 Da | 47.87 | 71.49 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 169 | 444 | 2.01943E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 2.3E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 181 | 244 | 1.8E-8 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 409 | 444 | 8.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 359 | 0.0054 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 445 | 8.7E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 447 | 3.7E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 359 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 362 | 402 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 175 | 360.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 445 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 412 | 445 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 11.629227 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 224 | 9.651964 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 431 | 445 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 206 | 220 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_039142445.1 | cell division cycle 20.2, cofactor of APC complex-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R5I3 | cell division cycle 20.2, cofactor of APC complex OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology