Basic Information
Locus ID:
gene.Thate09g00580
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
CRM domain-containing protein At3g25440
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 2249961 | 2271764 | + | gene.Thate09g00580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 51,500.79 Da | 49.06 | 65.79 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 98 | 238 | 8.6E-23 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 82 | 257 | 1.96E-38 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 106 | 262 | 2.8E-30 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 97 | 257 | 31.42548 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 351 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_039132899.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3S4N9H1 | NAC domain-containing protein 8 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00261600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology