Basic Information
Locus ID:
gene.Thate08g23920
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 380771610 | 380780183 | - | gene.Thate08g23920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 58,592.93 Da | 52.41 | 64.21 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00063 | Myosin head (motor domain) | 1 | 125 | 1.9E-57 | IPR001609 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 125 | 1.32E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 1 | 128 | 2.2E-61 | IPR036961 |
| SMART | SM00242 | MYSc_2a | 1 | 344 | 1.0E-13 | IPR001609 |
| ProSiteProfiles | PS51456 | Myosin motor domain profile. | 1 | 125 | 57.212921 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 33 | 58 | 5.2E-26 | IPR001609 |
| PRINTS | PR00193 | Myosin heavy chain signature | 80 | 107 | 5.2E-26 | IPR001609 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 414 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43900.1 | myosin 2. Encodes a member of the type XI myosin protein family that binds F-actin and co-localizes with actin filaments and peroxisomes. Homozygous mutants are reported to have pleiotropic effects in growth and fertility and may also be lethal. This protein is also involved in root hair growth and organelle trafficking. This protein interacts with RabC2a and RabD1 in a GTP-dependent manner. | 0 |
| RefSeq | XP_027181717.1 | myosin-6-like [Coffea eugenioides] | 0 |
| Q9LKB9 | Myosin-6 OS=Arabidopsis thaliana OX=3702 GN=XI-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9LN51 | Myosin motor domain-containing protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_010167 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21469, Sgl32083, Sgl32764, Sgl38048, Sgl47658, Sgl73332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046696 |
| Apiaceae | Apium graveolens | 1 | Ag10G00690 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001510 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004830.2N, BniB06g055190.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23920 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18016 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2141, BH01.50 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009586, gene-QYE76_028916 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G022250, Chr0G030460, Chr12G037710, Chr13G016450 |
| Poaceae | Zea mays | 1 | Zm00001eb343050_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15709, nbis-gene-16142, nbis-gene-29400 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG15.968, evm.TU.LG16.1283, evm.TU.LG20.1277 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.974 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21221, nbisL1-mrna-26239, nbisL1-mrna-27601 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7005 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10312, nbisL1-mrna-18336, nbisL1-mrna-7266 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.481 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009784 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5074, nbisL1-mrna-5075 |
| Salicaceae | Populus euphratica | 2 | populus_peu11888, populus_peu37973 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635994 |