Basic Information
Locus ID:
gene.Thate08g23780
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 379365415 | 379376843 | - | gene.Thate08g23780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 49,783.52 Da | 52.38 | 68.49 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 380 | 438 | 1.0E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 197 | 278 | 2.2E-16 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 193 | 268 | 5.75E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 382 | 5.14E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 269 | 326 | 2.22E-17 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 404 | 446 | 5.1E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 327 | 378 | 4.6E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 333 | 375 | 9.9E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 190 | 266 | 24.49445 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 268 | 332 | 32.98727 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 376 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_009411361.1 | PREDICTED: E3 ubiquitin-protein ligase MIEL1 [Musa acuminata subsp. malaccensis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804K5X5 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103993131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology