Basic Information
Locus ID:
gene.Thate08g23080
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 373498752 | 373499312 | + | gene.Thate08g23080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 20,684.27 Da | 61.97 | 83.28 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 29 | 76 | 7.67371E-21 | - |
| Pfam | PF15227 | zinc finger of C3HC4-type, RING | 31 | 74 | 5.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 87 | 3.93E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 110 | 4.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 31 | 74 | 3.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 31 | 75 | 12.872856 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 46 | 55 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 113 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_028556706.1 | E3 ubiquitin-protein ligase RMA2-like [Dendrobium catenatum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A444G017 | RING-type E3 ubiquitin transferase OS=Ensete ventricosum OX=4639 GN=GW17_00007327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology