Basic Information
Locus ID:
gene.Thate08g22490
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 370442352 | 370475623 | - | gene.Thate08g22490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 99,569.39 Da | 69.75 | 57.03 | -1.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 818 | 858 | 2.63685E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 816 | 863 | 2.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 818 | 864 | 2.43E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 801 | 869 | 1.6E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 819 | 858 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 712 | - | - |
| Coils | Coil | Coil | 99 | 119 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019705265.1 | uncharacterized protein LOC105042919 [Elaeis guineensis] | 0 |
| TrEMBL | A0A2H9ZRL9 | Putative E3 ubiquitin-protein ligase XBOS34 OS=Apostasia shenzhenica OX=1088818 GN=XBOS34 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology