Basic Information
Locus ID:
gene.Thate08g21990
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 366354588 | 366355436 | - | gene.Thate08g21990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 31,465.51 Da | 81.25 | 77.45 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 109 | 152 | 1.8748E-16 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 152 | 4.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 158 | 7.32E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 158 | 3.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 110 | 151 | 3.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 152 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 191 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010650068.1 | PREDICTED: RING-H2 finger protein ATL16 [Vitis vinifera] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | F6H8L8 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_05s0049g00480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg11098, jg12695, jg27791, jg35414, jg8706 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_15977, gene_15980, gene_19317 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000202, Ah018307 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g049310, BVRB_5g121000 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14789, Sbi_jg31452, Sbi_jg55571, Sbi_jg57822 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25466, Seu_jg26125 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018012, GOSA_00019556 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01036, Sgl06070, Sgl06124, Sgl54410, Sgl59739 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000847, gene:ENSEOMG00000007251 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0007850, CQ.Regalona.r1.3BG0007890 ... |
| Apiaceae | Apium graveolens | 3 | Ag2G02318, Ag5G02585, Ag8G01524 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G010150, COCNU_08G010950, COCNU_09G008530 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700032, gene-LOC103705563, gene-LOC103719452 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G10869, Ftri15G29084 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04360.1, AT5G43420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003389m.g.v1.0, Thhalv10009604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03170.v2.2, Sp2g08300.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001700.2N, BniB02g060890.2N, BniB06g046510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1311 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1374 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g03300 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5021 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.831 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002212, Pov_00002213, Pov_00002277, Pov_00025452 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.1517, BH01.4893, BH05.1666, BH07.3786, CH05.1886 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0150770, gene-QOZ80_2BG0206170 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0408390.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_026358, gene-QYE76_030806, gene-QYE76_030832 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G025530, Oco04G026020, Oco05G003040, Oco06G003050 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g57460.1, LOC_Os03g05560.1, LOC_Os08g44950.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G479300, gene-BS78_04G322600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604128 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G004430, Chr07G007140, Chr12G002260, Chr15G000560 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G523200, Tel6E01G718100, Tel7E01G448200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG055160, gene_TRIDC4BG053450 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G415800.1.cds1, TraesCS4B02G316600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb038810_P001, Zm00001eb191210_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-17685, nbis-gene-2885, nbis-gene-39787 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g14728, Zma_g17435, Zma_g2058, Zma_g24553, Zma_g4414 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2899, evm.TU.LG11.1444 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g13030, gene.Posoc06g06860 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1263, evm.TU.Scaffold_5_RagTag.1089 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11557, nbisL1-mrna-15833, nbisL1-mrna-1587 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-16170, nbisL1-mrna-16862, nbisL1-mrna-483 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10300, nbisL1-mrna-2521, nbisL1-mrna-726 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000006l.136, add.evm.TU.utg000011l.209 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002130 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19265, nbisL1-mrna-20696, nbisL1-mrna-22902 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1959, nbisL1-mrna-19799, nbisL1-mrna-4253 |
| Salicaceae | Populus euphratica | 3 | populus_peu07514, populus_peu21530, populus_peu32843 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609806, gene-LOC132610045, gene-LOC132618693 |
| Solanaceae | Solanum chilense | 4 | SOLCI001669500, SOLCI002981400, SOLCI006499700 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107015422, gene-LOC107022745, gene-LOC107030619 ... |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0692, TC01G0873, TC07G2382 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24530.v3.1 |