Basic Information
Locus ID:
gene.Thate08g21550
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 364185220 | 364215989 | - | gene.Thate08g21550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 197,250.92 Da | 45.34 | 89.71 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1357 | 1772 | 1.31776E-109 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1404 | 1770 | 5.9E-76 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 95 | 564 | 2.2E-34 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1350 | 1770 | 1.57E-90 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 89 | 403 | 8.9E-43 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1298 | 1542 | 2.1E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1651 | 1774 | 2.0E-29 | - |
| SMART | SM00119 | hect_3 | 1368 | 1772 | 7.7E-69 | IPR000569 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 137 | 166 | 8.7674 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1479 | 1782 | 51.452618 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 978 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 911 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 931 | 945 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015893373.1 | E3 ubiquitin-protein ligase UPL3 [Ziziphus jujuba var. spinosa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4B4L5 | HECT-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107427509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology