Basic Information
Locus ID:
gene.Thate08g21430
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 363520198 | 363526805 | + | gene.Thate08g21430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 33,100.78 Da | 45.67 | 89.50 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 31 | 178 | 1.4264E-42 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 251 | 294 | 3.25947E-21 | - |
| Pfam | PF02225 | PA domain | 79 | 163 | 1.9E-8 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 250 | 294 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 103 | 164 | 2.49E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 299 | 2.99E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 300 | 5.8E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 42 | 174 | 2.4E-25 | - |
| SMART | SM00184 | ring_2 | 252 | 293 | 3.7E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 252 | 294 | 13.167916 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_010933321.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Elaeis guineensis] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I0ALR9 | RING-H2 finger protein ATL8 OS=Apostasia shenzhenica OX=1088818 GN=ATL8 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology