Basic Information
Locus ID:
gene.Thate08g21220
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 362146569 | 362148458 | + | gene.Thate08g21220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 69,634.42 Da | 55.43 | 69.17 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 189 | 225 | 2.0E-8 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 276 | 331 | 2.0E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 421 | 455 | 9.3E-5 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 188 | 249 | 1.19E-12 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 237 | 576 | 6.8E-34 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 383 | 617 | 4.1E-17 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 188 | 221 | 2.2E-6 | - |
| Gene3D | G3DSA:2.130.10.80 | - | 222 | 382 | 1.1E-5 | IPR037293 |
| SMART | SM00256 | fbox_2 | 189 | 229 | 7.6E-7 | IPR001810 |
| SMART | SM00612 | kelc_smart | 421 | 468 | 0.1 | IPR006652 |
| SMART | SM00612 | kelc_smart | 287 | 345 | 0.0083 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 183 | 228 | 9.868391 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 145 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42360.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_010266225.1 | PREDICTED: F-box/kelch-repeat protein At5g42350-like [Nelumbo nucifera] | 0 |
| Q9FII1 | F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana OX=3702 GN=At5g42360 PE=2 SV=1 | 0 | |
| TrEMBL | A0A200PYN9 | F-box domain OS=Macleaya cordata OX=56857 GN=BVC80_8607g16 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11484, jg6037 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8632 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035826 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014390 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39824, Sbi_jg54822, Sbi_jg55164 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14503 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013035, GOSA_00013036 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12430, Sgl17697 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019170, gene:ENSEOMG00000034810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023370, CQ.Regalona.r1.1BG0000880 |
| Apiaceae | Apium graveolens | 1 | Ag2G03003 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723526 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2385.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G27726 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G42350.1, AT5G42360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003171m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | CeqSG0265 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8968 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.62 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037447 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2871, BH03.3040, CH03.3227 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0526550, gene-QOZ80_6BG0480480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0504400.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007097 |
| Poaceae | Oryza coarctata | 2 | Oco17G011470, Oco18G011410 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g38300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G268300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403653, Pt_Chr0700899, Pt_Chr0700905 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G006520, Chr11G012800, Chr14G009180, Chr21G009370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G569200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG034590, gene_TRIDC5AG051910 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G231200.1.cds1, TraesCS5A02G355600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb320670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50770, nbis-gene-59182 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29916 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.487, evm.TU.LG12.1227 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.865 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23790 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9143 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21599 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.56 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006311 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20947 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21904 |
| Salicaceae | Populus euphratica | 2 | populus_peu15497, populus_peu33133 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628230 |
| Solanaceae | Solanum chilense | 1 | SOLCI003211000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018203 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31461_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2420 |