Basic Information
Locus ID:
gene.Thate08g20470
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 357654749 | 357662880 | - | gene.Thate08g20470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 57,207.28 Da | 52.17 | 72.61 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 513 | 3.21E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 303 | 3.5E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 306 | 528 | 1.9E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 394 | 435 | 0.025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 390 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 292 | 1.4 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 83 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019705581.1 | uncharacterized protein LOC105043567 [Elaeis guineensis] | 0 |
| TrEMBL | A0A1D1YKQ5 | Histone acetyltransferase type B subunit 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=HAT2_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08570 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13010 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42490.v3.1, Zosma06g01650.v3.1 |