Basic Information
Locus ID:
gene.Thate08g18470
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Short Name:
SPO11-2
Description:
Type IIB DNA topoisomerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 345469559 | 345470020 | - | gene.Thate08g18470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 16,963.39 Da | 77.31 | 85.95 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 91 | 134 | 9.89984E-10 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 134 | 6.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 140 | 2.36E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 138 | 1.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 133 | 6.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 134 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 64 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_010934916.1 | E3 ubiquitin-protein ligase RHA1B [Elaeis guineensis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0IIB0 | E3 ubiquitin-protein ligase RHA1B OS=Cocos nucifera OX=13894 GN=COCNU_08G007870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology