Basic Information
Locus ID:
gene.Thate08g17980
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 342177630 | 342178883 | + | gene.Thate08g17980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 44,467.62 Da | 52.48 | 97.87 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 15 | 58 | 8.86851E-23 | - |
| Pfam | PF04564 | U-box domain | 13 | 81 | 6.0E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 81 | 3.89E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 108 | 385 | 5.28E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 401 | 1.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 94 | 4.6E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 14 | 78 | 1.1E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 85 | 39.320904 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010934556.1 | E3 ubiquitin-protein ligase PUB23-like [Elaeis guineensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1ZAL8 | RING-type E3 ubiquitin transferase OS=Anthurium amnicola OX=1678845 GN=PUB23_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology