Basic Information
Locus ID:
gene.Thate08g17270
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 337310917 | 337314528 | - | gene.Thate08g17270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 88,397.85 Da | 39.26 | 105.40 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 32 | 77 | 7.65635E-20 | - |
| Pfam | PF04564 | U-box domain | 30 | 103 | 3.9E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 109 | 2.0E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 139 | 794 | 8.4E-34 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 412 | 639 | 9.5E-6 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 564 | 799 | 5.8E-17 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 112 | 311 | 7.6E-19 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 312 | 555 | 8.8E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 111 | 3.8E-24 | IPR013083 |
| SMART | SM00185 | arm_5 | 138 | 178 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 669 | 710 | 90.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 264 | 304 | 20.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 31 | 99 | 5.2E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 714 | 756 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 344 | 390 | 390.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 27 | 106 | 26.821928 | IPR003613 |
| Coils | Coil | Coil | 254 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_010910720.2 | U-box domain-containing protein 44 [Elaeis guineensis] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QMM0 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105036670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11483, jg22560, jg6038 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8337 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035827 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014400 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39825, Sbi_jg55165 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14502 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013034 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12431, Sgl17698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019431, gene:ENSEOMG00000036220 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023360, CQ.Regalona.r1.1BG0000890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048200 |
| Apiaceae | Apium graveolens | 2 | Ag11G03525, Ag2G03004 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G014420, COCNU_08G009490, COCNU_10G009070 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103710505, gene-LOC103720109, gene-LOC103723310 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.297.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G01279, Ftri1G30940, Ftri8G18286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20780.1, AT1G76390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006866m.g.v1.0, Thhalv10018134m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18480.v2.2, Sp5g31540.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g008770.2N, BniB03g029340.2N, BniB03g055300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | CeqSG0264 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1252 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno02g10380, gene.Cymno09g00110, gene.Cymno10g08290 ... |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g20640, gene.Thate05g02960, gene.Thate08g17230 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8967 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.63 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023135 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02794 |
| Poaceae | Echinochloa crus-galli | 9 | AH03.2855, AH05.3217, AH07.4061, BH03.3026, BH05.3253 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0151760, gene-QOZ80_2BG0207130 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0449730.1, HORVU.MOREX.r3.6HG0634120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009400, gene-QYE76_009520, gene-QYE76_033574 |
| Poaceae | Oryza coarctata | 5 | Oco05G019450, Oco06G020230, Oco23G004820, Oco23G004830 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g45420.1, LOC_Os12g17880.1, LOC_Os12g17900.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G266600, gene-BS78_04G331200 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402551 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr04G020480, Chr06G021970, Chr0G005880, Chr13G000070 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G207600, Tel6E01G791700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG017550, gene_TRIDC5BG019230 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G111000.3, TraesCS5B02G110000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb133350_P001, Zm00001eb190530_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12407, nbis-gene-52803, nbis-gene-8232 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14770, Zma_g24971, Zma_g25697, Zma_g29930 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.475, evm.TU.LG15.467 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc02g11160, gene.Posoc06g15190, gene.Posoc06g15200 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.513 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26670 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4790 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15845 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.254 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002575 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13865 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2518 |
| Salicaceae | Populus euphratica | 2 | populus_peu15496, populus_peu33132 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628229 |
| Solanaceae | Solanum chilense | 1 | SOLCI003211100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018115 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31460_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2421 |
| Zosteraceae | Zostera marina | 3 | Zosma01g09610.v3.1, Zosma03g35280.v3.1, Zosma05g23510.v3.1 |