Basic Information
Locus ID:
gene.Thate08g15770
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 326957861 | 326970924 | - | gene.Thate08g15770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 86,640.43 Da | 48.88 | 77.45 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 441 | 481 | 7.62636E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 375 | 424 | 3.2E-17 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 442 | 482 | 1.4E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 111 | 165 | 9.7E-11 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 430 | 482 | 7.53E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 507 | 570 | 2.88E-9 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 671 | 755 | 3.48E-7 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 514 | 575 | 2.2E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 429 | 513 | 3.8E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 659 | 769 | 6.7E-6 | - |
| SMART | SM00249 | PHD_3 | 515 | 572 | 0.0025 | IPR001965 |
| SMART | SM00249 | PHD_3 | 441 | 482 | 5.2E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 439 | 484 | 10.335501 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 442 | 481 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010260093.1 | PREDICTED: uncharacterized protein LOC104599305 [Nelumbo nucifera] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3S3MLW6 | Zinc finger protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01492100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology