Basic Information
Locus ID:
gene.Thate08g15280
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 323795425 | 323802251 | - | gene.Thate08g15280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 68,279.51 Da | 48.27 | 89.32 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 125 | 1.21254E-45 | - |
| Pfam | PF03000 | NPH3 family | 212 | 463 | 7.7E-89 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 119 | 1.3E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 118 | 1.18E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 11 | 123 | 1.7E-13 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 30 | 98 | 9.971769 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 487 | 87.43367 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 581 | 611 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010907392.1 | BTB/POZ domain-containing protein NPY4 isoform X1 [Elaeis guineensis] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843VIZ3 | BTB/POZ domain-containing protein NPY4 OS=Colocasia esculenta OX=4460 GN=Taro_027739 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology