Basic Information
Locus ID:
gene.Thate08g14730
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 319123192 | 319124007 | + | gene.Thate08g14730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 30,609.37 Da | 44.06 | 96.05 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 48 | 100 | 1.2E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 104 | 1.87E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 140 | 3.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 48 | 102 | 0.0068 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 103 | 10.409105 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034673228.1 | uncharacterized protein LOC117904639 [Vitis riparia] | 0 |
| TrEMBL | A0A834SL54 | Putative transcription factor C2H2 family OS=Senna tora OX=362788 GN=G2W53_042153 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology