Basic Information
Locus ID:
gene.Thate08g14270
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 316509097 | 316511920 | - | gene.Thate08g14270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 50,187.97 Da | 49.92 | 97.21 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 7 | 44 | 7.1E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 383 | 1.18E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 48 | 1.23E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 47 | 1.6E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 383 | 3.0E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 10 | 51 | 5.5E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 41 | 8.808615 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58860.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_023744172.1 | putative F-box/FBD/LRR-repeat protein At1g78760 [Lactuca sativa] | 0 |
| Q9LXR6 | Putative F-box protein At3g58860 OS=Arabidopsis thaliana OX=3702 GN=At3g58860 PE=4 SV=1 | 0 | |
| TrEMBL | A0A1D1YJE9 | F-box/FBD/LRR-repeat protein At5g56420 (Fragment) OS=Anthurium amnicola OX=1678845 GN=At5g56420_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate08g14160, gene.Thate08g14190, gene.Thate08g14260 ... |