Basic Information
Locus ID:
gene.Thate08g14260
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 316501988 | 316503604 | - | gene.Thate08g14260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 51,772.88 Da | 51.02 | 108.65 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 8 | 43 | 4.7E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 101 | 400 | 9.42E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 79 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 221 | 422 | 3.0E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 92 | 216 | 3.4E-5 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 54 | 3.2E-8 | - |
| SMART | SM00256 | fbox_2 | 11 | 52 | 1.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 54 | 10.583739 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13965.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_020243541.1 | FBD-associated F-box protein At3g52670-like isoform X1 [Asparagus officinalis] | 0 |
| Q3EA38 | Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana OX=3702 GN=At4g13965 PE=4 SV=2 | 0 | |
| TrEMBL | A0A1D1YJE9 | F-box/FBD/LRR-repeat protein At5g56420 (Fragment) OS=Anthurium amnicola OX=1678845 GN=At5g56420_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate08g14160, gene.Thate08g14190, gene.Thate08g14260 ... |