Basic Information
Locus ID:
gene.Thate08g13210
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the leguminous lectin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 309285435 | 309286394 | + | gene.Thate08g13210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 34,485.08 Da | 62.73 | 85.02 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00139 | Legume lectin domain | 121 | 202 | 2.5E-9 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 28 | 204 | 4.06E-14 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 26 | 113 | 1.1E-6 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 114 | 207 | 2.3E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_009407575.1 | PREDICTED: L-type lectin-domain containing receptor kinase IV.4-like [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A843V953 | Lectin_legB domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_025529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14312, jg14808, jg2104, jg3304 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16498, gene_2434 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002083, Ah035229 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g024540, BVRB_3g059780, BVRB_5g102060 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg21350, Sbi_jg22497, Sbi_jg31982, Sbi_jg41995 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16382, Seu_jg25069 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009556, GOSA_00022174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53996, Sgl59330, Sgl62490, Sgl67036 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005484, gene:ENSEOMG00000018122 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019190, CQ.Regalona.r1.2AG0020930 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285210 |
| Apiaceae | Apium graveolens | 3 | Ag10G01241, Ag2G01888, Ag8G00127 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704184 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.267.V1.1, AsparagusV1_07.65.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G10987, Ftri17G26054, Ftri3G30341, Ftri6G28500 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G09035.1, AT3G09190.1, AT3G54080.1, AT5G01090.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010505m.g.v1.0, Thhalv10013972m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g07470.v2.2, Sp5g08310.v2.2, Sp6g40480.v2.2 |
| Brassicaceae | Brassica nigra | 8 | BniB01g055490.2N, BniB01g055560.2N, BniB05g031420.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g19660 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g10320, gene.Thate02g02690, gene.Thate08g13210 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1090, evm.TU.LG02.1815 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002803, Pov_00038830 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.8, BH03.7, CH03.15 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0583690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0158200.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g01100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G070900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704953, Pt_Chr0704955 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G002890, Chr28G000040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G486000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG038420, gene_TRIDC2BG018710 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G268500.1.cds1, TraesCS2B02G287300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb298010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52650 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4643 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.963, evm.TU.LG10.1059, evm.TU.LG17.1073 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1752, evm.TU.Scaffold_2_RagTag.671 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4524, nbisL1-mrna-5543 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1427, nbisL1-mrna-17997 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3749, nbisL1-mrna-9546 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.405, add.evm.TU.utg000016l.281 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004973 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18726, nbisL1-mrna-21903 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1080, nbisL1-mrna-13711, nbisL1-mrna-16459 |
| Salicaceae | Populus euphratica | 3 | populus_peu11388, populus_peu20373, populus_peu25543 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630138, gene-LOC132630622 |
| Solanaceae | Solanum chilense | 1 | SOLCI003086300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031535 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.13170_chr07_+, STRG.26848_chr04_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC02G1822, TC05G1525, TC07G0350, TC08G0906 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41000.v3.1 |