Basic Information
Locus ID:
gene.Thate08g11570
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 293798250 | 293799556 | + | gene.Thate08g11570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 36,888.39 Da | 30.50 | 79.33 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 73 | 8.37E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 105 | 1.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 31 | 70 | 2.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 38 | 67 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 38 | 67 | 9.361965 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 334 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015897527.1 | binding partner of ACD11 1 [Ziziphus jujuba var. spinosa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4AQA9 | binding partner of ACD11 1 OS=Ziziphus jujuba OX=326968 GN=LOC107431163 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology