Basic Information
Locus ID:
gene.Thate08g11430
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 292880420 | 292907823 | + | gene.Thate08g11430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 48,254.27 Da | 58.25 | 79.08 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 290 | 0.068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 338 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 99 | 417 | 1.39E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 418 | 2.3E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 295 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 208 | 480.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 50 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010938432.2 | autophagy-related protein 18a [Elaeis guineensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S7G3 | autophagy-related protein 18a OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105057501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology