Basic Information
Locus ID:
gene.Thate08g10280
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 282302569 | 282403541 | + | gene.Thate08g10280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 131,695.95 Da | 47.77 | 81.27 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 203 | 531 | 8.24946E-163 | - |
| CDD | cd00121 | MATH | 62 | 186 | 7.66558E-35 | IPR002083 |
| Pfam | PF00917 | MATH domain | 67 | 187 | 2.2E-17 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 892 | 1101 | 9.4E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 882 | 2.9E-71 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 205 | 526 | 2.6E-44 | IPR001394 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 59 | 191 | 1.8E-37 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 556 | 1.39E-94 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 808 | 905 | 1.0E-25 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 59 | 201 | 4.8E-48 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 690 | 807 | 2.3E-39 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 202 | 530 | 2.6E-87 | - |
| SMART | SM00061 | math_3 | 62 | 166 | 6.7E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 205 | 529 | 39.130501 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 60 | 185 | 35.707069 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 206 | 221 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 445 | 462 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| Coils | Coil | Coil | 545 | 569 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_010917891.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X8 [Elaeis guineensis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9QZD9 | ubiquitinyl hydrolase 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042399 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology