Basic Information
Locus ID:
gene.Thate08g09940
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 275737005 | 275765960 | + | gene.Thate08g09940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.94 | 40,573.01 Da | 55.80 | 71.99 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 1.49232E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 46 | 134 | 2.76776E-44 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 47 | 134 | 9.9E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 1.2E-12 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 260 | 333 | 1.83E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 34 | 145 | 7.59E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 247 | 345 | 4.9E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 31 | 142 | 1.0E-25 | IPR036431 |
| SMART | SM01014 | ARID_2 | 38 | 134 | 3.2E-25 | - |
| SMART | SM00398 | hmgende2 | 262 | 331 | 6.6E-15 | IPR009071 |
| SMART | SM00501 | bright_3 | 42 | 139 | 2.8E-25 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 41 | 138 | 24.425064 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 15.879725 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 179 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_020080091.1 | high mobility group B protein 9-like [Ananas comosus] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3S3R035 | High mobility group B protein 9-like protein isoform X2 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02160300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology