Basic Information
Locus ID:
gene.Thate08g09890
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 275301188 | 275310244 | - | gene.Thate08g09890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 44,935.36 Da | 52.52 | 82.65 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 133 | 151 | 0.00282365 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 317 | 385 | 6.2E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 245 | 394 | 2.93E-20 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 116 | 153 | 2.05E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 300 | 404 | 1.1E-22 | IPR027417 |
| SMART | SM00456 | ww_5 | 119 | 152 | 0.0028 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 291 | 407 | 12.753685 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 118 | 152 | 10.107901 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 124 | 150 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 188 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_002273908.2 | PREDICTED: ATP-dependent RNA helicase-like protein DB10 isoform X1 [Vitis vinifera] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | F6HUY4 | ATP-dependent RNA helicase-like protein DB10 OS=Vitis vinifera OX=29760 GN=VIT_14s0066g01020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology