Basic Information
Locus ID:
gene.Thate08g07560
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 209440793 | 209442208 | + | gene.Thate08g07560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 41,131.70 Da | 58.56 | 83.26 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 295 | 335 | 6.6E-8 | IPR002893 |
| Pfam | PF12937 | F-box-like | 51 | 94 | 6.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 94 | 2.35E-10 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 294 | 337 | 2.44E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 112 | 228 | 2.09E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 292 | 340 | 1.5E-7 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 31 | 93 | 1.1E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 96 | 240 | 3.1E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 293 | 335 | 10.9113 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_008801684.2 | F-box protein At1g67340-like [Phoenix dactylifera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CLK0 | F-box protein At1g67340-like OS=Phoenix dactylifera OX=42345 GN=LOC103715723 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology