Basic Information
Locus ID:
gene.Thate08g06660
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 193477561 | 193498003 | - | gene.Thate08g06660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.33 | 26,770.69 Da | 56.45 | 73.74 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 119 | 221 | 1.91362E-71 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 121 | 224 | 1.6E-50 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 110 | 224 | 1.14E-43 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 101 | 225 | 7.1E-59 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 59 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16520.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_008347578.1 | autophagy-related protein 8f isoform X1 [Malus domestica] | 0 |
| Q8VYK7 | Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1 | 0 | |
| TrEMBL | A0A5E4G6D5 | Autophagy-related protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B018626 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology