Basic Information
Locus ID:
gene.Thate08g04460
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 99518850 | 99580778 | - | gene.Thate08g04460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 46,892.27 Da | 50.78 | 81.45 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 279 | 407 | 1.28006E-62 | - |
| CDD | cd16571 | RING-HC_SIAHs | 163 | 201 | 1.34711E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 207 | 406 | 1.7E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 205 | 2.47E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 218 | 410 | 9.81E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 270 | 3.2E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 271 | 406 | 8.0E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 217 | 9.2E-7 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 218 | 278 | 14.262304 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 201 | 9.568184 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_010278776.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Nelumbo nucifera] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835MAA4 | RING-type E3 ubiquitin transferase OS=Coptis chinensis OX=261450 GN=IFM89_019871 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology