Basic Information
Locus ID:
gene.Thate08g03720
Species & Taxonomic ID:
Thalassia testudinum & 55497
Genome Assembly:
GCA_037157565.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 54533857 | 54537047 | - | gene.Thate08g03720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 53,318.91 Da | 34.55 | 82.80 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 360 | 0.008 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 171 | 191 | 7.3E-5 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 366 | 399 | 0.046 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 239 | 5.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 201 | 488 | 4.26E-43 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 3 | 28 | 2.62E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 181 | 254 | 6.4E-9 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 1 | 78 | 6.9E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 489 | 1.9E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 363 | 400 | 0.0011 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 168 | 193 | 0.028 | IPR000571 |
| SMART | SM00320 | WD40_4 | 450 | 487 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 360 | 6.2E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 4 | 29 | 6.8E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 200 | 239 | 4.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 316 | 4.1 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 3 | 30 | 14.013797 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 248 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 363 | 9.361965 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 166 | 194 | 12.642988 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 239 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 369 | 11.477578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 347 | 361 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 347 | 361 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 387 | 401 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 226 | 240 | 2.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_010933903.1 | zinc finger CCCH domain-containing protein 17 [Elaeis guineensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BBT8 | Zinc finger CCCH domain-containing protein 48-like OS=Nyssa sinensis OX=561372 GN=F0562_026562 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology